12/19/07

Fst Sliding windows data kindly provided by Dan Bradley's Lab


11/10/07

LD and MAF tracks created for Data visualization on light weight
genome browser


10/29/07

Marker coordinates for BTA4.0 provided from here

http://bfgl.anri.barc.usda.gov/tmp/BTA4.0/Marker_Position.txt


6/22/07

1. Breed of SNP origin info now available in marker file

2. Pedigree file updated (corrected animal ID in holstein)

06/15/07

1. The markers with more than 2 trio inconsistencies were removed 

2. Monomorphic markers with no alternate genotypes were removed

3. Sequence and Locus information updated for few markers.

05/03/07

1. Genotypes of Anoa and Buffalo samples were edited to
   correct for the problems in denoting the SNP identifiers 
   as A/T or T/A in different affy files.

04/26/07

The following updates have been performed on the genotypes database.

1. Genotypes of Anoa and Buffalo samples added

2. Trios table updated (display only valid genotypes)

3. Santa getrudis genotypes updated 
   (combined data from affymetrix and steve moore with different coding
    for the breed as SGT and STG)

4. Posted affymetrix report for 25K and 11K datasets on the discussion board
   as attachment and also in the shared documents section. This report
   contains suggestions from affymetrix to deal with discordant trio markers.